SingleCell - Trajectory Inference Methods

Key Information

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Challenge Overview

Single-cell -omics Trajectory Inference (TI) methods are essential tools for the analysis of cellular dynamic process and to understand gene regulation. More than 60 methods have been developed and the list still keeps growing.  It's time to bring fresh ideas to this emerging and exciting field and keep improving.

Challenge Prizes: $8,000 / $6,000 / $4,000 / $2,000 / $1,000 / $800 / $600 / $400 / $200

  IMPORTANT: For now, this page is a placeholder for the match teased above, which will be launched soon. We are still preparting necessary setup, data, and problem statement, and they will be published on this page as soon as we are ready to go. However, the registration to the match is already open, and you are encouraged to register, and subscribe the match forums, to be notified about match-related updates (the forum subscription is automatic upon the registration, but please double-check that Watch the Forum option is enabled in the forum, to get email notifications about new posts in the forums).

Ownership Rights of Submissions

Winning submissions will be open sourced. Please assign an Apache2 license for your submission to be considered for the prize. Challenge submissions must contain the following open source license: Apache-2.0. Submissions without this license will not be considered for placement. The license file must exist at the base or the root of the submission file tree structure. The license file must be names LICENSE with all caps. It may have a txt extension or an md extension.

Reliability Rating and Bonus

For challenges that have a reliability bonus, the bonus depends on the reliability rating at the moment of registration for that project. A participant with no previous projects is considered to have no reliability rating, and therefore gets no bonus. Reliability bonus does not apply to Digital Run winnings. Since reliability rating is based on the past 15 projects, it can only have 15 discrete values.
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